Lesson 6.1.2
6.1.2 DNA profiling and PCR amplification Quiz: Pearson Edexcel Biology A (Salters-Nuffield), Unit 6
20 questions
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Lesson 6.1.2, DNA profiling and PCR amplification: 20 multiple choice questions for the Pearson Edexcel Biology A (Salters-Nuffield) (9BI0), Unit 6: Immunity, Infection and Forensics, written with Revision Ninja.
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The 20 questions
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Which technique is used to make many copies of a small DNA sample?
- Gel electrophoresis, which separates DNA fragments according to their length
- Chromatography, which separates molecules by their charge and size only
- Restriction digestion, which cuts DNA at specific sequences and does not copy it
- Polymerase chain reaction (PCR)
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Which temperature step in PCR separates the two strands of the DNA double helix?
- Denaturation at about 95 C, when hydrogen bonds between the strands break
- Annealing at about 55 C, when primers bind to the single-stranded template
- Extension at about 72 C, when the polymerase builds new strands from nucleotides
- Cooling to room temperature, when the enzyme is inactivated so the reaction stops
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Why is a heat-stable DNA polymerase, such as Taq polymerase, used in PCR?
- It cuts the DNA into fragments, which makes the separation by gel electrophoresis easier
- It survives the high temperatures used in denaturation
- It works only at room temperature, so the reaction must be kept cool at all times
- It breaks down the primers, so the reaction produces only single-stranded DNA
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What is the role of primers in PCR?
- They cut the template DNA at specific sites so that fragments of the target can be separated
- They form the new DNA strands by themselves without needing any enzyme to join nucleotides
- They label the DNA with a fluorescent dye so that it can be seen after electrophoresis
- They bind to the template strands and provide a starting point for DNA polymerase to synthesise new DNA
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After 20 PCR cycles starting from one double-stranded DNA molecule, and assuming 100% efficiency, how many copies of the target sequence are produced?
- 1,048,576 copies, since 2^20 = 1,048,576
- 20,000 copies, since each cycle adds 1,000 new copies to the total
- 40 copies, since each cycle adds two copies to the original molecule
- 524,288 copies, since 2^19 is the number produced after twenty complete cycles
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Gel electrophoresis separates DNA fragments. In an agarose gel, which statement is correct?
- DNA is negatively charged, so it moves towards the positive electrode
- DNA is positively charged, so it moves towards the negative electrode, and longer fragments travel further
- DNA is neutral, so fragments are separated by their density at the top of the gel
- DNA does not move in an electric field, so the separation depends only on the gel's colour
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A DNA sample is run on a gel and the fragments are compared with a size marker. What does the marker allow?
- The approximate lengths of the unknown fragments to be estimated from their distance travelled
- The age of the person who provided the sample to be estimated from fragment size
- The number of individuals who contributed DNA to the sample to be counted directly
- The exact base sequence of each fragment to be determined without further testing
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DNA profiling is used in forensics mainly because:
- Short tandem repeat sequences vary between individuals
- Every individual has the same number of genes, so profiles reveal only gender
- DNA is destroyed within minutes of death, so profiling is only possible on living people
- All human DNA is identical, so profiling can only identify species and not individuals
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DNA profiling can also be used to determine genetic relationships between organisms. Which is the best example?
- Testing the pH of a sample to determine whether two plants share a common ancestor
- Comparing repeat-region profiles of animals to determine whether they belong to the same family group
- Measuring the colour of a feather to determine how closely two bird species are related
- Counting the total number of cells in a tissue sample to determine the age of an animal
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Which step of PCR allows primers to bind to complementary sequences on the single-stranded template?
- Annealing, at a lower temperature of about 55 to 65 C
- Ligation, at about 37 C, when the fragments are joined by a separate enzyme
- Extension, at about 72 C, when the polymerase synthesises the new strands
- Denaturation, at about 95 C, when the double helix is separated into single strands
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Why does PCR require a high level of care to avoid contamination?
- Because PCR only works in sterile conditions, so the reaction is always carried out in a vacuum
- Because contaminating DNA reduces the temperature of the reaction and so stops the cycle
- Because PCR destroys all DNA in a sample, so any contamination makes the result impossible to read
- Because even tiny amounts of foreign DNA would be amplified along with the target
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A PCR run produces a band on a gel for one sample but not for a negative control. What is the most likely interpretation?
- The target sequence was present in the sample and amplified, while the control contained no template
- The target sequence was destroyed by the reaction, so the gel shows its absence
- The control was contaminated, so both samples show identical bands on the gel
- The polymerase failed, so the gel contains only primers and no DNA at all
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Which is the main limitation of using PCR on a very small or degraded sample?
- PCR cannot amplify any DNA from a sample unless it contains at least one whole chromosome
- PCR produces only the primers, so no information about the original sample can be obtained
- The amplified product may be a mixture or may reflect contamination
- PCR requires the sample to be cooled to absolute zero, which damages all the DNA in it
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Why is the polymerase chain reaction described as exponential?
- Because the number of copies doubles in each cycle
- Because the reaction speed slows down as the number of copies increases over time
- Because the number of copies increases by the same fixed amount in each cycle
- Because the length of DNA fragments increases by a fixed amount with each cycle
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Which of the following is a true statement about DNA profiling?
- A profile is always certain to identify a suspect, so no statistical interpretation is ever needed
- A profile can only be produced from blood, so other samples such as hair cannot be used
- A profile shows the physical appearance of a person, including their height and eye colour
- A profile is only as reliable as the sample, the markers analysed and the statistical interpretation of matches
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Which molecule is copied during PCR?
- Only the protein products of the target gene, which are copied from its mRNA
- The entire genome of the organism in a single cycle, regardless of primer design
- A specific region of double-stranded DNA, defined by the two primers
- The ribosomes present in the sample, which are used to build new DNA strands
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What is the function of magnesium ions and the buffer in a PCR reaction?
- Magnesium ions act as a cofactor for the polymerase, and the buffer keeps the pH stable
- Magnesium ions break the hydrogen bonds between strands at room temperature without heating
- The buffer binds to the primers and prevents them from annealing to the template strands
- Magnesium ions cut the DNA into shorter lengths so that the fragments can be counted
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How many PCR cycles are needed to go from one template molecule to at least 1,000 copies, assuming perfect doubling?
- 5 cycles, since 2^5 = 32 and this already exceeds 1,000 copies in total
- 10 cycles, since 2^10 = 1,024 is the first power of two above 1,000
- 100 cycles, since 1,000 divided by 10 gives the number of cycles needed
- 3 cycles, since 3 x 1,000 = 3,000 copies is the smallest target that can be reached
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Which factor determines how far a DNA fragment travels in an agarose gel during electrophoresis?
- Its colour, since the stain binds more strongly to longer fragments and slows them down
- Its number of copies, since samples with more copies always travel further in the field
- Its temperature, since warm fragments diffuse faster through the gel than cool ones
- Its length, since shorter fragments pass more easily through the gel pores and move further
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In PCR, what is meant by the term template?
- The banding pattern produced after the amplified product has been run on a gel and stained
- The plastic tube in which the reaction is placed in the thermal cycler during each run
- The original DNA strand containing the target sequence, which is copied by the polymerase
- The mixture of nucleotides that is added to build the new strands during each extension step
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