Lesson 3.8.4.1.2
3.8.4.1.2 Amplifying DNA: PCR and in vivo cloning Quiz: AQA Biology, Unit 8
20 questions
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Lesson 3.8.4.1.2, Amplifying DNA: PCR and in vivo cloning: 20 multiple choice questions for the AQA Biology (7402), Unit 8: The control of gene expression, written with Revision Ninja.
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The 20 questions
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The polymerase chain reaction (PCR) is best described as:
- An in vivo method that uses living bacteria to copy DNA
- An in vitro method to amplify DNA fragments
- A technique that cuts DNA at specific sites
- A method that separates DNA fragments by size only
-
Which PCR step separates the two strands of DNA?
- Ligation by DNA ligase
- Denaturation at high temperature
- Extension by DNA polymerase at about 72 degrees Celsius
- Annealing of primers at a lower temperature
-
Why is a heat-stable DNA polymerase used in PCR?
- It cuts DNA at specific sequences
- It works only in the cytoplasm of host bacteria
- It is not denatured by the high temperature used in each cycle
- It converts RNA into DNA
-
In vivo cloning of a DNA fragment involves:
- Culturing transformed host cells that replicate the vector and fragment
- Cutting the fragment with restriction enzymes in a test tube
- Heating DNA to separate its strands
- Synthesising the fragment in a gene machine
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What are primers in PCR?
- Short DNA sequences that bind to the ends of the target fragment and start copying
- Long molecules of mRNA that code for protein, which are copied from the target fragment and then translated into an amino acid chain
- Enzymes that cut DNA into fragments at specific base sequences, so that the target fragment can be separated from the rest of the DNA
- Proteins that separate DNA strands by unwinding the double helix, so that each strand can be copied separately during the reaction
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After n cycles of PCR starting from one molecule of DNA, how many copies are made?
- n copies
- 2^n copies
- n^2 copies
- 2n copies
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Which of these is an in vivo method of amplifying a DNA fragment?
- Separating DNA fragments by size using gel electrophoresis, which is a method used after the fragment has been copied
- Heating DNA in a thermal cycler with primers and polymerase, which is a laboratory method that amplifies the fragment in a test tube
- Hybridising a labelled probe to a membrane carrying the DNA, which detects the fragment but does not amplify it at all
- Culturing bacteria transformed with a plasmid carrying the fragment
-
How many copies of a DNA molecule are made after 10 cycles of PCR starting from one molecule?
- 100
- 1024
- 512
- 20
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Why is the temperature lowered during the annealing step of PCR?
- To destroy any contaminating bacteria that might have entered the reaction tube, so that the PCR product is not mixed with other DNA
- To stop DNA polymerase from working until the reaction has cooled to room temperature, so that no new strands form in the cycle
- To make the DNA strands separate completely into single strands that can then be cut by restriction enzymes in the reaction tube
- To allow the primers to bind to complementary sequences on the single strands
-
What happens during the extension step of PCR?
- Primers are removed from the DNA
- The two strands of DNA are separated by heat
- Restriction enzymes cut the DNA into fragments
- DNA polymerase builds new complementary strands from the primers
-
Five molecules of DNA undergo four cycles of PCR. How many molecules are produced?
- 80
- 20
- 160
- 40
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What is the main advantage of in vivo cloning over PCR?
- It produces a stable, repeatable clone of the gene in host cells
- It is faster and needs no living cells, because the gene is copied in a test tube within minutes of the sample being collected
- It requires no primers or enzymes, since the host cells copy the vector without any help from DNA polymerase or other proteins
- It produces many copies without any vector, because the host cell copies the fragment directly from the chromosome of the organism
-
Why are bacteria often used as host cells for in vivo cloning?
- They cannot divide and so keep the DNA stable
- They do not contain any DNA of their own
- They always produce the desired gene without a vector
- They divide rapidly and can take up plasmid vectors
-
A plasmid carries an antibiotic resistance marker. Why is this used in cloning?
- The antibiotic stops PCR from working
- Antibiotic resistance kills all bacteria that take up the plasmid
- The antibiotic speeds up the replication of the fragment
- Only bacteria that took up the plasmid survive on antibiotic medium
-
Which statement best compares PCR with in vivo cloning?
- PCR needs living cells to replicate the DNA, while in vivo cloning needs no living cells because the reaction is run in a test tube
- PCR gives a stable clone of the gene that can be kept indefinitely, while in vivo cloning gives only a single copy that must be made again
- PCR is faster and needs no living cells, while in vivo cloning gives a stable clone but takes longer
- Both methods are identical in speed and require the same equipment, so the choice between them depends only on the cost of the primers
-
What is the minimum number of PCR cycles needed to produce at least 1000 copies starting from one molecule?
- 5
- 100
- 8
- 10
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Which sequence is correct within one cycle of PCR?
- Extension, then denaturation, then annealing of primers
- Ligation, then denaturation, then extension
- Annealing, then denaturation, then extension by DNA polymerase
- Denaturation, then annealing of primers, then extension by DNA polymerase
-
Why are primers needed in PCR in addition to DNA polymerase?
- Primers are the enzymes that separate the two DNA strands during the denaturation step, so they must be added before each heating stage
- Primers make the polymerase heat-resistant by binding to it, so the enzyme survives the high temperature of each PCR cycle
- Primers cut the DNA into smaller fragments at specific sites, so the target region can be separated from the rest of the molecule
- DNA polymerase can only add nucleotides to an existing 3 prime end, so primers provide that starting point
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Why might a PCR product be wrong if the annealing temperature is too high?
- High temperature creates extra copies of the primer and the DNA in every cycle, so the reaction produces too much product to analyse
- Primers become more specific at high temperatures, so the product is always the wrong fragment and no correct copies are ever made
- The DNA is copied more accurately at high temperatures, because the polymerase proofreads each base more carefully when the reaction is hot
- Primers may fail to bind specifically, so the wrong fragment or no fragment is amplified
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Why is in vivo cloning useful when a large, stable supply of a gene is required for research?
- It is the only method that produces DNA without any primers, so it can copy a fragment without knowing any of its sequence in advance
- It destroys the gene so that a new one must be made from scratch each time, which gives a fresh copy for every experiment run
- It removes the need for any vector or host cell, because the fragment is copied directly in a test tube without any living organisms
- Transformed host cells can be cultured to give a repeatable, growing supply of the cloned fragment
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